{"id":6065,"date":"2024-05-23T14:33:53","date_gmt":"2024-05-23T12:33:53","guid":{"rendered":"https:\/\/ist.blogs.inrae.fr\/afs\/?p=6065"},"modified":"2024-05-23T14:33:53","modified_gmt":"2024-05-23T12:33:53","slug":"whole-genome-screening-for-near-diagnostic-genetic-markers-for-four-western-european-white-oak-species-identification","status":"publish","type":"post","link":"https:\/\/ist.blogs.inrae.fr\/afs\/2024\/05\/23\/whole-genome-screening-for-near-diagnostic-genetic-markers-for-four-western-european-white-oak-species-identification\/","title":{"rendered":"Whole-genome screening for near-diagnostic genetic markers for four western European white oak species identification"},"content":{"rendered":"<script type='text\/javascript' src='https:\/\/d1bxh8uas1mnw7.cloudfront.net\/assets\/embed.js'><\/script><p><strong><a href=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2024\/05\/Kremer-2024.png\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-6068 alignright\" src=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2024\/05\/Kremer-2024-300x171.png\" alt=\"\" width=\"368\" height=\"210\" srcset=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2024\/05\/Kremer-2024-300x171.png 300w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2024\/05\/Kremer-2024-1024x584.png 1024w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2024\/05\/Kremer-2024-768x438.png 768w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2024\/05\/Kremer-2024-640x365.png 640w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2024\/05\/Kremer-2024.png 1043w\" sizes=\"auto, (max-width: 368px) 100vw, 368px\" \/><\/a>Key message<\/strong><\/p>\n<p align=\"justify\">Mining genome-wide DNA sequences enabled the discovery of near-diagnostic markers for species assignment in four European white oaks (<em>Quercus petraea<\/em> (Matt.) Liebl., <em>Quercus pubescens<\/em> Willd., <em>Quercus pyrenaica<\/em> Willd., and <em>Quercus robur<\/em> L.) despite their low interspecific differentiation. Near-diagnostic markers are almost fully fixed in one species and absent in the three others. As a result, only a handful of markers are needed for species identification, making this genetic assay a very promising operational taxonomic assignment procedure in research and forestry.<\/p>\n<p><strong>Keywords<\/strong><br \/>\n<em>Quercus<\/em>, Diagnosticity, Genetic differentiation, Pool-seq data, Captured sequences<\/p>\n<div class='altmetric-embed' data-badge-type='donut' data-doi='10.1186\/s13595-024-01236-9'  style='float: right; ' ><\/div>\n<p><strong>Publication<\/strong><br \/>\nKremer, A., Delcamp, A., Lesur, I. et al. Whole-genome screening for near-diagnostic genetic markers for four western European white oak species identification. Annals of Forest Science 81, 21 (2024). <a href=\"https:\/\/doi.org\/10.1186\/s13595-024-01236-9\">https:\/\/doi.org\/10.1186\/s13595-024-01236-9<\/a><\/p>\n<p><strong>Share this article<\/strong><br \/>\nhttps:\/\/rdcu.be\/dIM2s<\/p>\n<p><strong>Data and\/or Code availability<\/strong><br \/>\nThe data are accessible at the INRAE data repository via a DOI URL address (<a href=\"https:\/\/doi.org\/https:\/\/doi.org\/10.57745\/0JYLZU\">https:\/\/doi.org\/https:\/\/doi.org\/10.57745\/0JYLZU<\/a>).<\/p>\n<p><strong>Handling Editor<\/strong><br \/>\nMarjana Westergren<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Key message Mining genome-wide DNA sequences enabled the discovery of near-diagnostic markers for species assignment in four European white oaks (Quercus petraea (Matt.) Liebl., Quercus pubescens Willd., Quercus pyrenaica Willd., and Quercus robur L.) despite their low interspecific differentiation. Near-diagnostic markers are almost fully fixed in one species and absent in the three others. As [&hellip;]<\/p>\n","protected":false},"author":109,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[14,110,109,15],"tags":[],"class_list":["post-6065","post","type-post","status-publish","format-standard","hentry","category-article-type","category-data-in-repository","category-open-access","category-research-paper","cat-14-id","cat-110-id","cat-109-id","cat-15-id"],"_links":{"self":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/6065","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/users\/109"}],"replies":[{"embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/comments?post=6065"}],"version-history":[{"count":4,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/6065\/revisions"}],"predecessor-version":[{"id":6070,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/6065\/revisions\/6070"}],"wp:attachment":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/media?parent=6065"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/categories?post=6065"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/tags?post=6065"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}