{"id":5653,"date":"2023-03-10T08:36:41","date_gmt":"2023-03-10T07:36:41","guid":{"rendered":"https:\/\/ist.blogs.inrae.fr\/afs\/?p=5653"},"modified":"2023-03-10T08:36:41","modified_gmt":"2023-03-10T07:36:41","slug":"leaf-microbiome-data-for-european-beech-fagus-sylvatica-at-the-leaf-and-canopy-scales-collected-in-a-gallery-forest-in-south-west-france","status":"publish","type":"post","link":"https:\/\/ist.blogs.inrae.fr\/afs\/2023\/03\/10\/leaf-microbiome-data-for-european-beech-fagus-sylvatica-at-the-leaf-and-canopy-scales-collected-in-a-gallery-forest-in-south-west-france\/","title":{"rendered":"Leaf microbiome data for European beech (Fagus sylvatica) at the leaf and canopy scales collected in a gallery forest in South-West France"},"content":{"rendered":"<script type='text\/javascript' src='https:\/\/d1bxh8uas1mnw7.cloudfront.net\/assets\/embed.js'><\/script><p><strong><a href=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2023\/03\/Fort-2023.png\"><img loading=\"lazy\" decoding=\"async\" class=\"size-medium wp-image-5656 alignright\" src=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2023\/03\/Fort-2023-300x204.png\" alt=\"\" width=\"300\" height=\"204\" srcset=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2023\/03\/Fort-2023-300x204.png 300w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2023\/03\/Fort-2023-768x523.png 768w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2023\/03\/Fort-2023-640x436.png 640w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2023\/03\/Fort-2023.png 933w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a>Key message<\/strong><\/p>\n<p align=\"justify\">The datasets describe bacterial and fungal communities of European beech (<em>Fagus sylvatica<\/em>) leaves collected along a vertical gradient in a gallery forest throughout the growing season. They also describe communities in the surrounding environment of beech trees. Dataset access is at <a href=\"https:\/\/doi.org\/10.7910\/DVN\/FFHAQU\">https:\/\/doi.org\/10.7910\/DVN\/FFHAQU<\/a>, and associated metadata are available at <a href=\"https:\/\/metadata-afs.nancy.inra.fr\/geonetwork\/srv\/fre\/catalog.search#\/metadata\/f17fe848-fc3e-4297-be11-9871b35a1be4\">https:\/\/metadata-afs.nancy.inra.fr\/geonetwork\/srv\/fre\/catalog.search#\/metadata\/f17fe848-fc3e-4297-be11-9871b35a1be4<\/a>. Both can be used to uncover the dynamics and assembly processes of phyllosphere microbial communities in forest ecosystems.<\/p>\n<p><strong>Keywords<\/strong><br \/>\nMicrobial ecology; Forest microbiome; Fungi; Bacteria; Phyllosphere; <em>Fagus sylvatica<\/em><\/p>\n<div class='altmetric-embed' data-badge-type='donut' data-doi='10.1186\/s13595-023-01181-z'  style='float: right; ' ><\/div>\n<p><strong>Publication<\/strong><br \/>\nFort, T., Pauvert, C., Chancerel, E. et al. Leaf microbiome data for European beech (<em>Fagus sylvatica<\/em>) at the leaf and canopy scales collected in a gallery forest in South-West France. Annals of Forest Science 80, 14 (2023). <a href=\"https:\/\/doi.org\/10.1186\/s13595-023-01181-z\">https:\/\/doi.org\/10.1186\/s13595-023-01181-z<\/a><\/p>\n<p><strong>Data and\/or Code availability<\/strong><br \/>\nThe datasets generated during and\/or analyzed during the current study are available from the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under the accession numbers PRJNA699461 (16S reads) and PRJNA699462 (ITS1 reads).<\/p>\n<p><strong>Handling Editor<\/strong><br \/>\nV\u00e9ronique Lesage<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Key message The datasets describe bacterial and fungal communities of European beech (Fagus sylvatica) leaves collected along a vertical gradient in a gallery forest throughout the growing season. They also describe communities in the surrounding environment of beech trees. Dataset access is at https:\/\/doi.org\/10.7910\/DVN\/FFHAQU, and associated metadata are available at https:\/\/metadata-afs.nancy.inra.fr\/geonetwork\/srv\/fre\/catalog.search#\/metadata\/f17fe848-fc3e-4297-be11-9871b35a1be4. Both can be used [&hellip;]<\/p>\n","protected":false},"author":109,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[14,110,100,109],"tags":[],"class_list":["post-5653","post","type-post","status-publish","format-standard","hentry","category-article-type","category-data-in-repository","category-data-paper","category-open-access","cat-14-id","cat-110-id","cat-100-id","cat-109-id"],"_links":{"self":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/5653","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/users\/109"}],"replies":[{"embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/comments?post=5653"}],"version-history":[{"count":3,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/5653\/revisions"}],"predecessor-version":[{"id":5657,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/5653\/revisions\/5657"}],"wp:attachment":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/media?parent=5653"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/categories?post=5653"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/tags?post=5653"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}