{"id":5487,"date":"2022-08-31T11:51:26","date_gmt":"2022-08-31T09:51:26","guid":{"rendered":"https:\/\/ist.blogs.inrae.fr\/afs\/?p=5487"},"modified":"2022-08-31T11:51:26","modified_gmt":"2022-08-31T09:51:26","slug":"de-novo-transcriptome-assembly-reveals-characteristics-of-flower-sex-determination-of-excoecaria-agallocha","status":"publish","type":"post","link":"https:\/\/ist.blogs.inrae.fr\/afs\/2022\/08\/31\/de-novo-transcriptome-assembly-reveals-characteristics-of-flower-sex-determination-of-excoecaria-agallocha\/","title":{"rendered":"De novo transcriptome assembly reveals characteristics of flower sex determination of Excoecaria agallocha"},"content":{"rendered":"<script type='text\/javascript' src='https:\/\/d1bxh8uas1mnw7.cloudfront.net\/assets\/embed.js'><\/script><p><strong><a href=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2022\/08\/Zhou-2022.png\"><img loading=\"lazy\" decoding=\"async\" class=\"size-medium wp-image-5489 alignright\" src=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2022\/08\/Zhou-2022-300x152.png\" alt=\"\" width=\"300\" height=\"152\" srcset=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2022\/08\/Zhou-2022-300x152.png 300w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2022\/08\/Zhou-2022-768x389.png 768w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2022\/08\/Zhou-2022-640x324.png 640w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2022\/08\/Zhou-2022.png 942w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a>Key message<\/strong><\/p>\n<p align=\"justify\">MADS-box genes family may play important roles in the flower sex determination in <em>Excoecaria agallocha<\/em>. A total of 73 MADS-box genes were identified in <em>E. agallocha<\/em>. De novo transcriptome assembly analysis suggested that <em>AP1\/FUL<\/em>, <em>AP3\/PI<\/em>, <em>AGL104<\/em>, and <em>SOC1<\/em> plays potential roles in <em>E. agallocha<\/em> flower sex determination.<\/p>\n<p><strong>Keywords<\/strong><br \/>\n<em>E. agallocha<\/em>; MADS-box; Sex determination<\/p>\n<div class='altmetric-embed' data-badge-type='donut' data-doi='10.1186\/s13595-022-01154-8'  style='float: right; ' ><\/div>\n<p><strong>Publication<\/strong><br \/>\nZhou, Y., Hao, L., Huang, L. et al. De novo transcriptome assembly reveals characteristics of flower sex determination of <em>Excoecaria agallocha<\/em>. Annals of Forest Science 79, 36 (2022). <a href=\"https:\/\/doi.org\/10.1186\/s13595-022-01156-6\">https:\/\/doi.org\/10.1186\/s13595-022-01156-6<\/a><\/p>\n<p><strong>Data and\/or Code availability<\/strong><br \/>\nThe datasets generated during the current study are available in the NCBI database: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA760657\">https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA760657<\/a>. Supplementary dataset is also available at: <a href=\"https:\/\/doi.org\/10.6084\/m9.figshare.20362563.v5\">https:\/\/doi.org\/10.6084\/m9.figshare.20362563.v5<\/a><\/p>\n<p><strong>Handling Editor<\/strong><br \/>\nV\u00e9ronique Jorge<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Key message MADS-box genes family may play important roles in the flower sex determination in Excoecaria agallocha. A total of 73 MADS-box genes were identified in E. agallocha. De novo transcriptome assembly analysis suggested that AP1\/FUL, AP3\/PI, AGL104, and SOC1 plays potential roles in E. agallocha flower sex determination. Keywords E. agallocha; MADS-box; Sex determination [&hellip;]<\/p>\n","protected":false},"author":109,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[14,110,109,15],"tags":[],"class_list":["post-5487","post","type-post","status-publish","format-standard","hentry","category-article-type","category-data-in-repository","category-open-access","category-research-paper","cat-14-id","cat-110-id","cat-109-id","cat-15-id"],"_links":{"self":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/5487","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/users\/109"}],"replies":[{"embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/comments?post=5487"}],"version-history":[{"count":3,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/5487\/revisions"}],"predecessor-version":[{"id":5491,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/5487\/revisions\/5491"}],"wp:attachment":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/media?parent=5487"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/categories?post=5487"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/tags?post=5487"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}