{"id":4889,"date":"2021-04-21T10:24:05","date_gmt":"2021-04-21T08:24:05","guid":{"rendered":"https:\/\/ist.blogs.inrae.fr\/afs\/?p=4889"},"modified":"2021-04-21T10:24:05","modified_gmt":"2021-04-21T08:24:05","slug":"a-genomic-dataset-of-single%e2%80%90nucleotide-polymorphisms-generated-by-ddrad-tag-sequencing-in-q-petraea-matt-liebl-populations-from-central-eastern-europe-and-balkan-peninsula","status":"publish","type":"post","link":"https:\/\/ist.blogs.inrae.fr\/afs\/2021\/04\/21\/a-genomic-dataset-of-single%e2%80%90nucleotide-polymorphisms-generated-by-ddrad-tag-sequencing-in-q-petraea-matt-liebl-populations-from-central-eastern-europe-and-balkan-peninsula\/","title":{"rendered":"A genomic dataset of single\u2010nucleotide polymorphisms generated by ddRAD tag sequencing in Q. petraea (Matt.) Liebl. populations from Central-Eastern Europe and Balkan Peninsula"},"content":{"rendered":"<script type='text\/javascript' src='https:\/\/d1bxh8uas1mnw7.cloudfront.net\/assets\/embed.js'><\/script><p><strong><a href=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2021\/04\/Toth-2021.png\"><img loading=\"lazy\" decoding=\"async\" class=\"size-medium wp-image-4893 alignright\" src=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2021\/04\/Toth-2021-300x171.png\" alt=\"\" width=\"300\" height=\"171\" srcset=\"https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2021\/04\/Toth-2021-300x171.png 300w, https:\/\/ist.blogs.inrae.fr\/afs\/wp-content\/uploads\/sites\/5\/2021\/04\/Toth-2021.png 521w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a>Key message<\/strong><\/p>\n<p align=\"justify\">This genomic dataset provides highly variable SNP markers from georeferenced natural <em>Quercus petraea<\/em> (Matt.) Liebl. populations collected in Bulgaria, Hungary, Romania, Serbia, Bosnia and Herzegovina, Kosovo* and Albania. These SNP loci can be used to assess genetic diversity, differentiation, and population structure, and can also be used to detect signatures of selection and local adaptation. The dataset can be accessed at <a href=\"https:\/\/doi.org\/10.5281\/zenodo.3908963\">https:\/\/doi.org\/10.5281\/zenodo.3908963<\/a> (T\u00f3th et al. 2020 ). Associated metadata available at <a href=\"https:\/\/metadata-afs.nancy.inra.fr\/geonetwork\/srv\/fre\/catalog.search#\/metadata\/b6fee4fa-01e9-44d0-92f5-ad19379f9693\">https:\/\/metadata-afs.nancy.inra.fr\/geonetwork\/srv\/fre\/catalog.search#\/metadata\/b6fee4fa-01e9-44d0-92f5-ad19379f9693<\/a>.<\/p>\n<p><em>* This designation is without prejudice to positions on status, and is in line with UNSCR 1244 (1999) and the ICJ Opinion\u2019s on the Kosovo* Declaration of Independenc<\/em>e.<\/p>\n<p><strong>Keywords<\/strong><br \/>\nSingle-nucleotide polymorphism; Double digest; RAD-seq; Sessile oak; Genetic variation<\/p>\n<div class='altmetric-embed' data-badge-type='donut' data-doi='10.1007\/s13595-021-01051-6'  style='float: right; ' ><\/div>\n<p><strong>Publication<\/strong><br \/>\nT\u00f3th, E.G., K\u00f6b\u00f6lkuti, Z.A., Cseke, K. et al. A genomic dataset of single\u2010nucleotide polymorphisms generated by ddRAD tag sequencing in <em>Q. petraea<\/em> (Matt.) Liebl. populations from Central-Eastern Europe and Balkan Peninsula. Annals of Forest Science 78, 43 (2021). <a href=\"https:\/\/doi.org\/10.1007\/s13595-021-01051-6\">https:\/\/doi.org\/10.1007\/s13595-021-01051-6<\/a><\/p>\n<p><strong>For the read-only version of the full text:<\/strong><br \/>\n<a href=\"https:\/\/rdcu.be\/ci5EB\">https:\/\/rdcu.be\/ci5EB<\/a><\/p>\n<p><strong>Data availability<\/strong><br \/>\nThe datasets generated during and analyzed during the current study are available in the ZENODO repository, <a href=\"https:\/\/doi.org\/10.5281\/zenodo.3908963\">https:\/\/doi.org\/10.5281\/zenodo.3908963<\/a><\/p>\n<p><strong>Handling Editor<\/strong><br \/>\nMarianne Peiffer<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Key message This genomic dataset provides highly variable SNP markers from georeferenced natural Quercus petraea (Matt.) Liebl. populations collected in Bulgaria, Hungary, Romania, Serbia, Bosnia and Herzegovina, Kosovo* and Albania. These SNP loci can be used to assess genetic diversity, differentiation, and population structure, and can also be used to detect signatures of selection and [&hellip;]<\/p>\n","protected":false},"author":109,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[14,110,100,109],"tags":[],"class_list":["post-4889","post","type-post","status-publish","format-standard","hentry","category-article-type","category-data-in-repository","category-data-paper","category-open-access","cat-14-id","cat-110-id","cat-100-id","cat-109-id"],"_links":{"self":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/4889","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/users\/109"}],"replies":[{"embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/comments?post=4889"}],"version-history":[{"count":0,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/posts\/4889\/revisions"}],"wp:attachment":[{"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/media?parent=4889"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/categories?post=4889"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/ist.blogs.inrae.fr\/afs\/wp-json\/wp\/v2\/tags?post=4889"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}